6DF8
Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS), pH 6.5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-10-20 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.03316 |
Spacegroup name | C 2 2 2 |
Unit cell lengths | 44.371, 184.267, 104.938 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.138 - 2.536 |
R-factor | 0.1838 |
Rwork | 0.179 |
R-free | 0.22160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4f6m |
RMSD bond length | 0.011 |
RMSD bond angle | 1.214 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX (1.9_1692) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.138 | 2.630 |
High resolution limit [Å] | 2.536 | 2.540 |
Rmerge | 0.117 | |
Rmeas | 0.127 | |
Number of reflections | 14573 | 1268 |
<I/σ(I)> | 10.94 | |
Completeness [%] | 98.7 | 87.27 |
Redundancy | 6.6 | 5.3 |
CC(1/2) | 0.998 | 0.694 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 295 | 0.2 M Disodium tartrate, 20 % PEG 3350 |