Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6DF8

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS), pH 6.5

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2013-10-20
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.03316
Spacegroup nameC 2 2 2
Unit cell lengths44.371, 184.267, 104.938
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution43.138 - 2.536
R-factor0.1838
Rwork0.179
R-free0.22160
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4f6m
RMSD bond length0.011
RMSD bond angle1.214
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX (1.9_1692)
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.1382.630
High resolution limit [Å]2.5362.540
Rmerge0.117
Rmeas0.127
Number of reflections145731268
<I/σ(I)>10.94
Completeness [%]98.787.27
Redundancy6.65.3
CC(1/2)0.9980.694
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52950.2 M Disodium tartrate, 20 % PEG 3350

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon