6DCL
Crystal structure of UP1 bound to pri-miRNA-18a terminal loop
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-07-11 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.8726 |
Spacegroup name | P 62 2 2 |
Unit cell lengths | 127.028, 127.028, 147.064 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.066 - 2.497 |
R-factor | 0.2032 |
Rwork | 0.202 |
R-free | 0.22810 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.072 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.9) |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.070 | 2.600 |
High resolution limit [Å] | 2.497 | 2.500 |
Rmerge | 0.089 | 0.953 |
Rmeas | 0.094 | 1.008 |
Rpim | 0.028 | 0.316 |
Number of reflections | 24934 | 2731 |
<I/σ(I)> | 19.7 | |
Completeness [%] | 99.9 | 99.2 |
Redundancy | 9.8 | 9.2 |
CC(1/2) | 0.999 | 0.801 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M sodium citrate, 20% PEG 3350 |