6D9R
The substrate-bound crystal structure of HPRT (hypoxanthine phosphoribosyltransferase)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-03-08 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 113.758, 113.758, 56.731 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 37.190 - 1.640 |
R-factor | 0.1668 |
Rwork | 0.166 |
R-free | 0.19620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6d9s |
RMSD bond length | 0.010 |
RMSD bond angle | 1.223 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.167 | 1.670 |
High resolution limit [Å] | 1.640 | 1.640 |
Rmeas | 0.137 | 1.376 |
Rpim | 0.029 | 0.350 |
Number of reflections | 51750 | 2548 |
<I/σ(I)> | 31.09 | |
Completeness [%] | 99.8 | 99 |
Redundancy | 21.5 | 14.4 |
CC(1/2) | 0.810 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2 M ammonium acetate, 0.1 M sodium acetate trihydrate, pH 4.6, 30% PEG4000 |