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6D9I

Pekin duck egg lysozyme isoform II (DEL-II)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron siteAustralian Synchrotron
BeamlineMX2
Temperature [K]100
Detector technologyCCD
Collection date2017-11-05
DetectorADSC QUANTUM 315r
Wavelength(s)0.95372
Spacegroup nameP 1 21 1
Unit cell lengths27.340, 55.130, 69.029
Unit cell angles90.00, 95.95, 90.00
Refinement procedure
Resolution42.990 - 1.150
R-factor0.1565
Rwork0.155
R-free0.18640
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5v8g
RMSD bond length0.011
RMSD bond angle1.595
Data reduction softwareMOSFLM (7.2.2)
Data scaling softwareAimless (0.5.32)
Phasing softwarePHASER (2.7.17)
Refinement softwareREFMAC (5.8.0222)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.99042.9901.170
High resolution limit [Å]1.1506.3001.150
Rmerge0.0940.0420.677
Rmeas0.1020.0460.739
Rpim0.0390.0180.291
Number of reflections723954743563
<I/σ(I)>9
Completeness [%]100.099.8100
Redundancy6.46.16.2
CC(1/2)0.9980.9980.624
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8293400 nL 6 mg/mL protein in 25 mM Tris, 150 mM sodium chloride + 400 nL well solution (200 mM magnesium chloride, 100 mM Tris, pH 8.0, 20% v/v PEG6000)

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PDB entries from 2024-08-07

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