6D9I
Pekin duck egg lysozyme isoform II (DEL-II)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-11-05 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.95372 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 27.340, 55.130, 69.029 |
Unit cell angles | 90.00, 95.95, 90.00 |
Refinement procedure
Resolution | 42.990 - 1.150 |
R-factor | 0.1565 |
Rwork | 0.155 |
R-free | 0.18640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5v8g |
RMSD bond length | 0.011 |
RMSD bond angle | 1.595 |
Data reduction software | MOSFLM (7.2.2) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.7.17) |
Refinement software | REFMAC (5.8.0222) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.990 | 42.990 | 1.170 |
High resolution limit [Å] | 1.150 | 6.300 | 1.150 |
Rmerge | 0.094 | 0.042 | 0.677 |
Rmeas | 0.102 | 0.046 | 0.739 |
Rpim | 0.039 | 0.018 | 0.291 |
Number of reflections | 72395 | 474 | 3563 |
<I/σ(I)> | 9 | ||
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 6.4 | 6.1 | 6.2 |
CC(1/2) | 0.998 | 0.998 | 0.624 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 400 nL 6 mg/mL protein in 25 mM Tris, 150 mM sodium chloride + 400 nL well solution (200 mM magnesium chloride, 100 mM Tris, pH 8.0, 20% v/v PEG6000) |