Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6D12

Crystal structure of C-terminal xRRM domain of human Larp7 bound to 7SK stem-loop 4 RNA

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2017-07-20
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.979300
Spacegroup nameP 1 21 1
Unit cell lengths47.910, 34.030, 95.010
Unit cell angles90.00, 95.18, 90.00
Refinement procedure
Resolution94.622 - 2.205
R-factor0.2299
Rwork0.228
R-free0.26730
Structure solution methodMAD
RMSD bond length0.008
RMSD bond angle0.999
Data reduction softwareXDS (20170615)
Data scaling softwareXSCALE (20170615)
Phasing softwareHKL2Map (2016/1)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]94.62294.6222.260
High resolution limit [Å]2.2009.8302.200
Rmerge0.1690.0911.191
Rmeas0.1810.0981.279
Total number of observations120222
Number of reflections159292071187
<I/σ(I)>6.5417.271.43
Completeness [%]99.999.599.9
Redundancy7.5476.6047.48
CC(1/2)0.9960.9980.720
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.12930.05M Na Cacodylate,0.08M Mg acetate, 24% PEG 4000

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon