6CE6
Structure of HDAC6 zinc-finger ubiquitin binding domain soaked with 3,3'-(benzo[1,2-d:5,4-d']bis(thiazole)-2,6-diyl)dipropionic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-06-11 |
Detector | RIGAKU SATURN A200 |
Wavelength(s) | 1.54178 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.600, 45.320, 55.820 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.000 - 1.600 |
R-factor | 0.1728 |
Rwork | 0.172 |
R-free | 0.19610 |
Starting model (for MR) | pdbid 5KH3 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.739 |
Data reduction software | xia2 |
Data scaling software | Aimless (0.5.32) |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 32.830 | 32.830 | 1.630 |
High resolution limit [Å] | 1.600 | 8.620 | 1.600 |
Rmerge | 0.050 | 0.028 | 0.236 |
Rmeas | 0.054 | 0.031 | 0.255 |
Rpim | 0.020 | 0.013 | 0.094 |
Total number of observations | 95123 | 590 | 4621 |
Number of reflections | 13611 | 119 | 648 |
<I/σ(I)> | 25.7 | 46.6 | 8.1 |
Completeness [%] | 96.5 | 99.1 | 92.5 |
Redundancy | 7 | 5 | 7.1 |
CC(1/2) | 0.999 | 0.999 | 0.973 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 291 | 2 M Na-formate, 0.2 M Na-acetate pH4.6, 5 % ethylene glycol |