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6CE6

Structure of HDAC6 zinc-finger ubiquitin binding domain soaked with 3,3'-(benzo[1,2-d:5,4-d']bis(thiazole)-2,6-diyl)dipropionic acid

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2015-06-11
DetectorRIGAKU SATURN A200
Wavelength(s)1.54178
Spacegroup nameP 21 21 21
Unit cell lengths40.600, 45.320, 55.820
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution32.000 - 1.600
R-factor0.1728
Rwork0.172
R-free0.19610
Starting model (for MR)pdbid 5KH3
RMSD bond length0.014
RMSD bond angle1.739
Data reduction softwarexia2
Data scaling softwareAimless (0.5.32)
Refinement softwareREFMAC (5.8.0189)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]32.83032.8301.630
High resolution limit [Å]1.6008.6201.600
Rmerge0.0500.0280.236
Rmeas0.0540.0310.255
Rpim0.0200.0130.094
Total number of observations951235904621
Number of reflections13611119648
<I/σ(I)>25.746.68.1
Completeness [%]96.599.192.5
Redundancy757.1
CC(1/2)0.9990.9990.973
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62912 M Na-formate, 0.2 M Na-acetate pH4.6, 5 % ethylene glycol

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PDB entries from 2024-07-17

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