6C9C
Crystal structure of LpxC from Pseudomonas aeruginosa in complex with racemic ligand PT803
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-12-07 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 35.660, 79.340, 50.920 |
Unit cell angles | 90.00, 92.01, 90.00 |
Refinement procedure
Resolution | 35.638 - 2.000 |
R-factor | 0.1675 |
Rwork | 0.162 |
R-free | 0.21340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vwm |
RMSD bond length | 0.006 |
RMSD bond angle | 1.140 |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.638 | 35.638 | 2.050 |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.098 | 0.026 | 0.563 |
Rmeas | 0.113 | 0.030 | 0.662 |
Total number of observations | 76737 | ||
Number of reflections | 18652 | 219 | 1098 |
<I/σ(I)> | 11.72 | 40.43 | 2.02 |
Completeness [%] | 97.1 | 98.6 | 76.8 |
Redundancy | 4.114 | 3.845 | 3.387 |
CC(1/2) | 0.997 | 0.999 | 0.769 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.7 | 290 | tray296747a A10: 100 mM Tris-HCl, pH 8.5, 30% (w/v) Propanol, 30% (w/v) PEG 3350 +1mM ZnCl2, 1mM BSI108453 (PT803) : Cryo = 20%EG : PsaeA.00166.a.DG15.PD00471 at 5 mg/ml, puck qcu4-1 |