6BOQ
Human APE1 substrate complex with an A/A mismatch adjacent the THF
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-07-21 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 |
Unit cell lengths | 44.296, 60.946, 73.293 |
Unit cell angles | 83.44, 78.29, 87.53 |
Refinement procedure
Resolution | 24.584 - 1.960 |
R-factor | 0.219 |
Rwork | 0.217 |
R-free | 0.25830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dff |
RMSD bond length | 0.011 |
RMSD bond angle | 1.226 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 2.000 |
High resolution limit [Å] | 1.960 | 5.330 | 1.970 |
Rmerge | 0.065 | 0.037 | 0.479 |
Rmeas | 0.072 | 0.040 | 0.604 |
Rpim | 0.031 | 0.016 | 0.362 |
Number of reflections | 95288 | 2663 | 2601 |
<I/σ(I)> | 15.7 | ||
Completeness [%] | 99.2 | 100 | 97.8 |
Redundancy | 4.3 | 6.5 | 2.4 |
CC(1/2) | 0.999 | 0.583 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 291 | 7% PEG 20K, 100mM sodium Citrate, 15% glycerol, 5mM CaCl2 |