6BC7
Cryo X-ray structure of sisomicin bound AAC-VIa
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2016-07-10 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 61 |
Unit cell lengths | 78.550, 78.550, 83.604 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 35.615 - 1.800 |
R-factor | 0.1508 |
Rwork | 0.149 |
R-free | 0.18570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6bc6 |
RMSD bond length | 0.009 |
RMSD bond angle | 0.987 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11_2567: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.850 |
High resolution limit [Å] | 1.800 | 4.120 | 1.800 |
Rmerge | 0.089 | 0.033 | 0.532 |
Total number of observations | 76779 | ||
Number of reflections | 26880 | 2298 | 2190 |
<I/σ(I)> | 9.1 | ||
Completeness [%] | 98.7 | 99 | 96.3 |
Redundancy | 2.9 | 2.9 | 2.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 285 | 17-25% PEG4000, 0.1 M sodium citrate, pH 5.6, 0.2 M ammonium acetate, 10% glycerol |