Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6B9Y

Trastuzumab Fab v3 in complex with 5-phenyl meditope variant

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2017-01-04
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.5418
Spacegroup nameP 21 21 21
Unit cell lengths52.990, 104.600, 116.290
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.903 - 2.140
R-factor0.1733
Rwork0.171
R-free0.21780
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4ioi
RMSD bond length0.006
RMSD bond angle0.865
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX ((1.11.1_2575: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]31.3502.200
High resolution limit [Å]2.1402.140
Rmeas0.1801.090
Number of reflections364072655
<I/σ(I)>9.11.65
Completeness [%]99.9100
Redundancy4.84.7
CC(1/2)0.9940.568
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.1 M Tris pH 7.5, 15% PEG3350, 24 mM NaCl

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon