6B8B
E. coli LptB in complex with ADP and a novobiocin derivative
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-08-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 104.030, 34.780, 62.710 |
Unit cell angles | 90.00, 101.38, 90.00 |
Refinement procedure
Resolution | 43.715 - 1.950 |
R-factor | 0.1822 |
Rwork | 0.180 |
R-free | 0.22370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4p32 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.912 |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER |
Refinement software | PHENIX (1.11_2567) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 61.480 | 43.710 | 2.000 |
High resolution limit [Å] | 1.870 | 8.940 | 1.950 |
Rmerge | 0.080 | 0.034 | 0.675 |
Rmeas | 0.110 | 0.042 | 0.843 |
Rpim | 0.063 | 0.024 | 0.500 |
Number of reflections | 52602 | ||
<I/σ(I)> | 10.4 | ||
Completeness [%] | 98.7 | 96 | 98.6 |
Redundancy | 2.9 | 2.8 | 2.6 |
CC(1/2) | 0.996 | 0.997 | 0.524 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 100mM MES pH = 6.5, 30% w/v PEG4000, 1.3mM novobiocin-adamantyl |