6AX4
Plk-1 polo-box domain in complex with histidine N(tau)-cyclized Macrocycle 5b.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-12-04 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97917 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 35.449, 51.294, 58.034 |
Unit cell angles | 90.00, 100.84, 90.00 |
Refinement procedure
Resolution | 17.408 - 1.450 |
R-factor | 0.1338 |
Rwork | 0.132 |
R-free | 0.16560 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4dfw |
RMSD bond length | 0.009 |
RMSD bond angle | 1.048 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 17.408 | 100.000 | 1.480 |
High resolution limit [Å] | 1.450 | 3.940 | 1.450 |
Rmerge | 0.066 | 0.041 | 0.628 |
Rmeas | 0.073 | 0.046 | 0.709 |
Rpim | 0.031 | 0.020 | 0.326 |
Total number of observations | 196289 | ||
Number of reflections | 36144 | 1825 | 1797 |
<I/σ(I)> | 8.6 | ||
Completeness [%] | 99.4 | 96.9 | 99.1 |
Redundancy | 5.4 | 5.3 | 4.6 |
CC(1/2) | 0.997 | 0.769 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | Well solution: 0.2 M Calcium Chloride, 12.5% PEG-3350 Protein: 10 mg/ml PBD-macrocycle complex in 0.5 M Sodium Chloride, 10 mM TRIS pH 8.0, 0.4 M ammonium acetate 1:1 mix of protein complex and well solution |