6AOI
Crystal structure of Toxoplasma gondii TS-DHFR complexed with NADPH, dUMP, PDDF, and 5-(4-phenylpiperazin-1-yl)-6-propylpyrimidine-2,4-diamine (TRC-2528)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-09-26 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.979282 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 53.437, 145.053, 174.503 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 2.970 |
R-factor | 0.22006 |
Rwork | 0.217 |
R-free | 0.27557 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4eil |
RMSD bond length | 0.007 |
RMSD bond angle | 1.135 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.6.0016) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.080 |
High resolution limit [Å] | 2.970 | 2.970 |
Rmerge | 0.114 | 0.596 |
Number of reflections | 26892 | |
<I/σ(I)> | 9.8 | |
Completeness [%] | 91.7 | |
Redundancy | 2.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.8 | 293 | 0.2 M ammonium citrate, pH 4.6, 15% PEG3350 |