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6AL3

Lys49 PLA2 BPII derived from the venom of Protobothrops flavoviridis.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-17A
Synchrotron sitePhoton Factory
BeamlineBL-17A
Temperature [K]100
Detector technologyPIXEL
Collection date2017-11-11
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.98
Spacegroup nameP 64
Unit cell lengths126.900, 126.900, 64.880
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution45.363 - 2.570
R-factor0.2269
Rwork0.218
R-free0.24510
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5vfh
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]45.36345.3632.720
High resolution limit [Å]2.5707.6002.570
Rmerge0.1230.0330.564
Rmeas0.1340.0350.611
Total number of observations129632
Number of reflections192457803080
<I/σ(I)>12.6234.313
Completeness [%]99.999.299.8
Redundancy6.7366.3776.873
CC(1/2)1.0001.0000.846
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.2293100 mM Sodium acetate pH 4.2, 0.5 M Ammonium acetate, 32.5% PEG 4000

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