6AFO
Crystal structure of class A b-lactamase, PenL, variant Asn136Asp, from Burkholderia thailandensis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-12-05 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97954 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 34.986, 92.723, 68.878 |
Unit cell angles | 90.00, 92.72, 90.00 |
Refinement procedure
Resolution | 31.772 - 1.399 |
R-factor | 0.1487 |
Rwork | 0.147 |
R-free | 0.17390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5gl9 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.590 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.420 |
High resolution limit [Å] | 1.399 | 1.399 |
Rmerge | 0.080 | 0.271 |
Number of reflections | 86131 | 4254 |
<I/σ(I)> | 40.23 | |
Completeness [%] | 99.0 | |
Redundancy | 7.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 100 mM sodium acetate pH 5.0 200 mM sodium chloride 25% (w/v) polyethylene glycol 3350 |