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6ABI

The apo-structure of D-lactate dehydrogenase from Fusobacterium nucleatum

Replaces:  3WWY
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE AR-NW12A
Synchrotron sitePhoton Factory
BeamlineAR-NW12A
Temperature [K]100
Detector technologyCCD
Collection date2012-11-20
DetectorADSC QUANTUM 210
Wavelength(s)1.00000
Spacegroup nameP 43 21 2
Unit cell lengths116.290, 116.290, 234.400
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.030 - 2.100
R-factor0.18793
Rwork0.186
R-free0.21665
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1j49
RMSD bond length0.024
RMSD bond angle2.102
Data reduction softwareiMOSFLM
Data scaling softwareSCALA
Phasing softwareMOLREP
Refinement softwareREFMAC (5.7.0032)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]37.0302.210
High resolution limit [Å]2.1002.100
Rmerge0.1710.831
Rpim0.0460.229
Number of reflections9438513597
<I/σ(I)>9.73.2
Completeness [%]100.0100
Redundancy14.513.7
CC(1/2)0.9960.908
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6298100 mM MES-Na (pH 6.0) and 1.26 M ammonium sulfate

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