6A6P
Crystal Structure of Peroxisome Proliferator-Activated Receptor Delta (PPARd)LBD in Complex with DN003316
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-06-18 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97960 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 39.605, 95.749, 96.936 |
Unit cell angles | 90.00, 97.91, 90.00 |
Refinement procedure
Resolution | 38.201 - 2.100 |
R-factor | 0.1953 |
Rwork | 0.194 |
R-free | 0.22780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5u3r |
RMSD bond length | 0.008 |
RMSD bond angle | 0.994 |
Data scaling software | HKL-2000 |
Refinement software | PHENIX ((1.13_2998)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.140 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.102 | |
Number of reflections | 41153 | |
<I/σ(I)> | 19.01 | |
Completeness [%] | 98.3 | |
Redundancy | 5.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIQUID DIFFUSION | 6.5 | 291.15 | 0.2~0.3M Sodium flouride, 0.1M MES(pH 6.5) |