6A50
structure of benzoylformate decarboxylases in complex with cofactor TPP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 98.15 |
Detector technology | PIXEL |
Collection date | 2017-12-17 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9785 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 104.889, 124.392, 97.758 |
Unit cell angles | 90.00, 122.35, 90.00 |
Refinement procedure
Resolution | 82.590 - 1.800 |
R-factor | 0.15997 |
Rwork | 0.159 |
R-free | 0.17706 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1bfd |
RMSD bond length | 0.008 |
RMSD bond angle | 1.251 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 82.590 | 50.000 | 1.830 |
High resolution limit [Å] | 1.800 | 4.880 | 1.800 |
Rmerge | 0.096 | 0.033 | 0.726 |
Rmeas | 0.104 | 0.035 | 0.787 |
Rpim | 0.039 | 0.013 | 0.301 |
Number of reflections | 97121 | 4947 | 4778 |
<I/σ(I)> | 7.1 | ||
Completeness [%] | 99.4 | 99.4 | 98.7 |
Redundancy | 6.8 | 6.9 | 6.6 |
CC(1/2) | 0.999 | 0.826 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIQUID DIFFUSION | 289.15 | 0.2M calcium acetate, 0.1M HEPES (pH 7.5) and 40%(w/v) polyethylene glycol (PEG) 400 |