6A35
Crystal structure of 5-methylthioribose 1-phosphate isomerase from Pyrococcus horikoshii OT3 - Form II
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2018-03-10 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 |
Unit cell lengths | 46.170, 91.230, 102.070 |
Unit cell angles | 108.58, 98.09, 104.62 |
Refinement procedure
Resolution | 93.890 - 2.650 |
R-factor | 0.2146 |
Rwork | 0.210 |
R-free | 0.29420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6a34 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.520 |
Data reduction software | MOSFLM (7.2.1) |
Data scaling software | Aimless (0.5.28) |
Phasing software | PHASER (2.6.1) |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 93.890 | 82.020 | 2.760 |
High resolution limit [Å] | 2.650 | 9.550 | 2.650 |
Rmerge | 0.096 | 0.057 | 0.557 |
Rmeas | 0.113 | 0.069 | 0.657 |
Rpim | 0.060 | 0.039 | 0.346 |
Number of reflections | 41560 | 905 | 4648 |
<I/σ(I)> | 9.4 | ||
Completeness [%] | 96.5 | 97.8 | 94.9 |
Redundancy | 3.6 | 3.3 | 3.6 |
CC(1/2) | 0.992 | 0.987 | 0.819 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 0.05M ammonium acetate, 0.1M tris pH 8.0, 16% PEG 10000, 0.05M sodium acetate |