6ZOB
3-Formylrifamycin SV binding to the access pocket of AcrB L protomer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-12-05 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.980 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 145.361, 160.195, 244.341 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.150 - 2.800 |
R-factor | 0.2388 |
Rwork | 0.238 |
R-free | 0.26230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jmn |
RMSD bond length | 0.002 |
RMSD bond angle | 1.180 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.3) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.150 | 49.100 | 2.850 |
High resolution limit [Å] | 2.800 | 15.340 | 2.800 |
Rmerge | 0.232 | 0.043 | 2.080 |
Rmeas | 0.245 | 0.046 | 2.200 |
Rpim | 0.080 | 0.016 | 0.712 |
Number of reflections | 140616 | 956 | 6882 |
<I/σ(I)> | 9 | 1.2 | |
Completeness [%] | 100.0 | 97.1 | 100 |
Redundancy | 9.1 | 8 | 9.3 |
CC(1/2) | 0.995 | 0.998 | 0.506 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.6 | 291 | 0.05M ADA, PH 6.9, 0.15-0.25M AMMONIUM SULFATE, 5% GLYCEROL, 8-9% PEG4000, 0.003M rifampicin |