6ZJF
Crystal structure of STK17B (DRAK2) in complex with AP-229
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-27 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.03320 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 83.349, 83.349, 114.259 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.270 - 1.750 |
R-factor | 0.1809 |
Rwork | 0.179 |
R-free | 0.21000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3lm0 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.496 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.270 | 37.270 | 1.810 |
High resolution limit [Å] | 1.750 | 6.780 | 1.750 |
Rmerge | 0.084 | 0.038 | 0.865 |
Rmeas | 0.096 | 0.042 | 0.998 |
Rpim | 0.036 | 0.017 | 0.361 |
Number of reflections | 41311 | 836 | 3990 |
<I/σ(I)> | 11.9 | 2.1 | |
Completeness [%] | 100.0 | 99.3 | 100 |
Redundancy | 7.2 | 6.2 | 7.4 |
CC(1/2) | 0.998 | 0.998 | 0.509 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 277.15 | 19% PEG 3350, 0.1M NaCl, 0.1M bis-tris 6.0 |