6Z2D

Crystal structure of wild type OgpA from Akkermansia muciniphila in P 41 21 2

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	DIAMOND BEAMLINE I24
Synchrotron site	DIAMOND
Beamline	I24
Temperature [K]	100
Detector technology	PIXEL
Collection date	2019-05-16
Detector	DECTRIS PILATUS 6M
Wavelength(s)	0.968820
Spacegroup name	P 41 21 2
Unit cell lengths	64.861, 64.861, 187.426
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	29.024 - 1.899
R-factor	0.1909
Rwork	0.189
R-free	0.22100
Structure solution method	SAD
Data reduction software	XDS
Data scaling software	XDS
Phasing software	CRANK2
Refinement software	PHENIX (1.14_3260)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	29.024	1.967
High resolution limit [Å]	1.899	1.899
Rmerge	0.092	0.840
Rmeas	0.095	0.840
Number of reflections	32350	2963
<I/σ(I)>	26.95
Completeness [%]	99.3
Redundancy	24.9	21.1
CC(1/2)	1.000	0.687

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP		291	100 mM sodium HEPES/MOPS pH 7.5, 100 mM carboxylic acids mixture (sodium formate, ammonium acetate, sodium citrate tribasic dihydrate, sodium potassium tartrate tetrahydrate and sodium oxamate), 20% PEG 500 MME and 10% PEG 20000