6YVE

Glycogen phosphorylase b in complex with pelargonidin 3-O-beta-D-glucoside

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron site	PETRA III, EMBL c/o DESY
Beamline	P13 (MX1)
Temperature [K]	100
Detector technology	PIXEL
Collection date	2019-06-29
Detector	DECTRIS PILATUS 6M
Wavelength(s)	0.9763
Spacegroup name	P 43 21 2
Unit cell lengths	126.147, 126.147, 115.522
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	126.150 - 2.100
Rwork	0.169
R-free	0.22630
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	1gpb
RMSD bond length	0.008
RMSD bond angle	1.548
Data reduction software	XDS
Data scaling software	Aimless
Phasing software	MOLREP
Refinement software	REFMAC (5.8.0258)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	126.150	2.160
High resolution limit [Å]	2.100	2.100
Rmerge	0.085	0.530
Number of reflections	54889	42833
<I/σ(I)>	14.7
Completeness [%]	99.9
Redundancy	9.3
CC(1/2)	0.998	0.950

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	BATCH MODE	6.8	289	10mM BES buffer pH 6.7