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6YPA

The C146A variant of an amidase from Pyrococcus horikoshii with bound glutaramide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2010-02-14
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.0000
Spacegroup nameP 21 21 21
Unit cell lengths77.684, 100.639, 134.096
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution80.492 - 1.580
R-factor0.2082
Rwork0.206
R-free0.23980
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1j31
Data reduction softwareDIALS
Data scaling softwarexia2
Phasing softwarePHASER (2.8.2)
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]100.640100.8401.610
High resolution limit [Å]1.5804.2901.580
Rmeas0.1250.0432.971
Rpim0.0420.0151.036
Total number of observations12643386551657570
Number of reflections14408676537104
<I/σ(I)>8.846.10.4
Completeness [%]100.010099.8
Redundancy8.88.68.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP3002.5-4.0 mg/ml protein, 0.1 M Imidazole, MES monohydrate (acid) buffer at pH 6.5, 20% v/v Glycerol, 10% w/v PEG 4000, 0.2M Glutaramide

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PDB entries from 2024-05-15

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