6YIZ
Crystal structure of PqsR (MvfR) ligand-binding domain in complex with triazolo-pyridine inverse agonist A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-28 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0332 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 109.810, 120.650, 113.190 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.320 - 2.163 |
R-factor | 0.2058 |
Rwork | 0.203 |
R-free | 0.25970 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2q7v |
RMSD bond length | 0.014 |
RMSD bond angle | 1.593 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.18rc4) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 93.600 | 2.453 |
High resolution limit [Å] | 2.160 | 2.163 |
Rmerge | 0.113 | |
Rmeas | 0.118 | |
Rpim | 0.032 | |
Number of reflections | 20478 | 1023 |
<I/σ(I)> | 15 | |
Completeness [%] | 93.6 | 73.9 |
Redundancy | 13 | 2.1 |
CC(1/2) | 0.999 | 0.540 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 150 mM MgCl2 1.180 M LiCl 0.1 M MES pH 6.2 10 mg/ml PqsR + 1.5 mM triazolo-pyridine inverse agonist A + 0.4 mM Ponceau 4 R |