6YGD
Crystal structure of the NatC complex bound to Gag peptide and CoA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-20 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 48.136, 134.927, 165.740 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.337 - 2.752 |
R-factor | 0.2061 |
Rwork | 0.204 |
R-free | 0.24800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6yga |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.1) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.337 | 45.337 | 2.920 |
High resolution limit [Å] | 2.750 | 8.140 | 2.750 |
Rmerge | 0.194 | 0.034 | 1.342 |
Rmeas | 0.211 | 0.037 | 1.456 |
Total number of observations | 188898 | ||
Number of reflections | 28788 | 1235 | 4458 |
<I/σ(I)> | 9.33 | 42.02 | 1.32 |
Completeness [%] | 99.5 | 99 | 97.5 |
Redundancy | 6.562 | 5.678 | 6.683 |
CC(1/2) | 0.996 | 0.999 | 0.598 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.3 | 293 | 14.5% PEG 4000, 150 mM ammonium iodide and 100 mM sodium citrate, pH 6.3 |