6Y91
Crystal structure of malate dehydrogenase from Plasmodium Falciparum in complex with NADH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SEALED TUBE |
Source details | BRUKER D8 QUEST |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-16 |
Detector | Bruker PHOTON II |
Wavelength(s) | 1.540 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 84.620, 107.420, 145.080 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 18.270 - 2.500 |
R-factor | 0.241 |
Rwork | 0.239 |
R-free | 0.28600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5nfr |
RMSD bond length | 0.007 |
RMSD bond angle | 1.323 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX ((dev_3753: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 18.270 | 2.570 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.200 | 1.100 |
Number of reflections | 46208 | 3249 |
<I/σ(I)> | 9.3 | 2.1 |
Completeness [%] | 99.7 | 96.6 |
Redundancy | 16.8 | 16.3 |
CC(1/2) | 0.990 | 0.610 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 1.4 M trisodium citrate, 0.1 M Hepes, 10 mM NADH |