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6XUQ

Human Ecto-5'-nucleotidase (CD73) in complex with A1618 (compound 1b in publication) in the closed state in crystal form III

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2018-03-02
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.91841
Spacegroup nameC 2 2 21
Unit cell lengths53.090, 93.850, 235.660
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.210 - 1.970
R-factor0.213
Rwork0.212
R-free0.23900
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)4h2i
RMSD bond length0.010
RMSD bond angle1.190
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareBUSTER (2.10.3)
Refinement softwareBUSTER (2.10.3)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.13047.1302.090
High resolution limit [Å]1.9705.8701.970
Rmerge0.1200.0323.381
Rmeas0.1420.0383.984
Number of reflections80202302012856
<I/σ(I)>6.8132.260.37
Completeness [%]99.699.599.2
Redundancy3.4823.533.528
CC(1/2)0.9980.9990.135
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8291Reservoir: 7.5 % PEG 6.000, 0.1 M MES pH 6.2. Drop: 1 micro-L crystallization buffer + 1 micro-L of 3 mg/mL CD73 in 10 mM Tris pH 8.0, 10 micro-M ZnCl2 and 1 mM of compound. Cryo: 20% PEG200 in crystallization drop

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PDB entries from 2024-05-15

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