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6XE8

Crystal Structure of the PTP1B YopH WPD loop Chimera 3 apo form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL9-1
Synchrotron siteSSRL
BeamlineBL9-1
Temperature [K]100
Detector technologyCCD
Collection date2019-04-17
DetectorADSC QUANTUM 315r
Wavelength(s)0.97946
Spacegroup nameP 31 2 1
Unit cell lengths87.955, 87.955, 102.606
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution43.977 - 1.952
R-factor0.1643
Rwork0.163
R-free0.18520
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3qkp
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER (2.8.1)
Refinement softwarePHENIX (1.15.2_3472)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.020
High resolution limit [Å]1.9504.2001.950
Rmerge0.0590.0280.752
Rmeas0.0610.0290.786
Rpim0.0140.0070.220
Total number of observations604329
Number of reflections3377635773231
<I/σ(I)>10.7
Completeness [%]99.899.997.8
Redundancy17.918.411.2
CC(1/2)1.0000.815
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.5277.15tris hydrochloride pH 8.5, magnesium acetate tetrahydrate, PEG 8000 and benzamidine

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