6W8D
Structure of DNMT3A (R882H) in complex with CGT DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-17 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | .5 |
Spacegroup name | H 3 |
Unit cell lengths | 205.560, 205.560, 89.505 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 33.159 - 2.598 |
R-factor | 0.2015 |
Rwork | 0.199 |
R-free | 0.25260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5yx2 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.160 | 2.690 |
High resolution limit [Å] | 2.598 | 2.600 |
Number of reflections | 43419 | 43403 |
<I/σ(I)> | 13.7 | |
Completeness [%] | 98.9 | |
Redundancy | 5.1 | |
CC(1/2) | 0.998 | 0.636 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.1 M Sodium Citrate pH 4.2, 1% PEG8000 |