6W5A
Crystal Structure of the Fab fragment of humanized 5c8 antibody containing the fluorescent non-canonical amino acid L-(7-hydroxycoumarin-4-yl)ethylglycine at pH 9.7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-29 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.91976 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 91.861, 60.182, 73.258 |
Unit cell angles | 90.00, 98.94, 90.00 |
Refinement procedure
Resolution | 72.370 - 1.750 |
R-factor | 0.1949 |
Rwork | 0.193 |
R-free | 0.24070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6bjz |
RMSD bond length | 0.014 |
RMSD bond angle | 1.723 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.6.1) |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 72.370 | 50.000 | 1.780 |
High resolution limit [Å] | 1.750 | 4.750 | 1.750 |
Rmerge | 0.153 | 0.125 | 0.694 |
Rmeas | 0.175 | 0.142 | 0.804 |
Rpim | 0.082 | 0.067 | 0.400 |
Number of reflections | 39519 | 2054 | 1985 |
<I/σ(I)> | 5.3 | ||
Completeness [%] | 99.0 | 99 | 99.5 |
Redundancy | 4.2 | 4.4 | 3.7 |
CC(1/2) | 0.961 | 0.662 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 273 | 30% PEG 3350, 0.1 M Citric Acid/Sodium Citrate pH 3.8 |