Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6W4I

APE1 Y269A product complex with abasic DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007
Temperature [K]100
Detector technologyPIXEL
Collection date2019-05-22
DetectorDECTRIS PILATUS 200K
Wavelength(s)1.54
Spacegroup nameP 21 21 21
Unit cell lengths45.381, 150.233, 156.450
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution43.580 - 2.200
R-factor0.1867
Rwork0.185
R-free0.22680
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5dff
RMSD bond length0.008
RMSD bond angle1.028
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.5802.240
High resolution limit [Å]2.2002.200
Rmeas0.0730.440
Number of reflections912102649
<I/σ(I)>20.6
Completeness [%]99.596.9
Redundancy5.93.5
CC(1/2)0.792
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.529124% PEG 3350, 0.1 M Bis Tris Propane (pH 6.5), 0.2 M Sodium Fluoride

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon