Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6VI4

Nanobody-Enabled Monitoring of Kappa Opioid Receptor States

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2017-07-01
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.033
Spacegroup nameP 21 2 21
Unit cell lengths102.394, 108.191, 155.100
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.010 - 3.300
R-factor0.2433
Rwork0.242
R-free0.27140
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4djh
RMSD bond length0.010
RMSD bond angle1.344
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]30.01330.0003.390
High resolution limit [Å]3.2987.7203.300
Rmerge0.1820.0591.114
Rmeas0.1980.0661.210
Rpim0.0750.0270.454
Number of reflections2634021461998
<I/σ(I)>3.6
Completeness [%]99.197.799.2
Redundancy6.666.6
CC(1/2)0.9960.480
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1LIPIDIC CUBIC PHASE293100 mM Tris pH 7.0, 360-400 mM Ammonium citrate dibasic, 28-32% PEG400

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon