6VCJ
Crystal structure of hsDHFR in complex with NADP+, DAP, and R-naproxen
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-21 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 38.397, 124.457, 84.614 |
Unit cell angles | 90.00, 96.35, 90.00 |
Refinement procedure
Resolution | 42.050 - 2.340 |
R-factor | 0.194 |
Rwork | 0.192 |
R-free | 0.23820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4m6j |
RMSD bond length | 0.003 |
RMSD bond angle | 0.569 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.390 |
High resolution limit [Å] | 2.339 | 2.339 |
Rmeas | 0.122 | |
Rpim | 0.070 | 0.385 |
Number of reflections | 31414 | 1495 |
<I/σ(I)> | 7.8 | 1.86 |
Completeness [%] | 94.6 | |
Redundancy | 2.8 | |
CC(1/2) | 0.995 | 0.610 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.4 | 293 | Protein solution: 9mg/ml in 50mM NaCl, 10mM Tris, 5mM NADP+, 10mM 2,4-diaminopyrimidine, 20mM R-Naproxen Mother Liquor: 20% PEG 20,000 |