6V34
Crystal structure of BRAF V600E oncogenic mutant in complex with TAK-580
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 48.802, 85.244, 122.905 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.920 - 3.150 |
R-factor | 0.2566 |
Rwork | 0.255 |
R-free | 0.28590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ita |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.925 | 3.263 |
High resolution limit [Å] | 3.150 | 3.150 |
Rmerge | 0.252 | |
Rmeas | 0.268 | |
Rpim | 0.113 | 0.692 |
Number of reflections | 9189 | 893 |
<I/σ(I)> | 7.56 | 1.55 |
Completeness [%] | 96.7 | |
Redundancy | 6.1 | |
CC(1/2) | 0.989 | 0.708 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 0.2 M Sodium Acetate, 0.1 M Tris: HCl, pH 8.5, 30 % (w/v) PEG 4000 |