6UO6
Crystal Structure of the R422Q missense variant of human PGM1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2018-12-11 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.00003 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 171.804, 171.804, 99.278 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.610 - 2.150 |
R-factor | 0.1772 |
Rwork | 0.175 |
R-free | 0.21300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5epc |
RMSD bond length | 0.006 |
RMSD bond angle | 0.780 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.610 | 2.190 |
High resolution limit [Å] | 2.150 | 2.150 |
Rmerge | 0.161 | 1.725 |
Rpim | 0.064 | 0.811 |
Number of reflections | 80932 | 4515 |
<I/σ(I)> | 104.3 | 1.4 |
Completeness [%] | 100.0 | 100 |
Redundancy | 13.9 | 10.6 |
CC(1/2) | 0.998 | 0.603 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 1.7-1.95 ammonium sulfate, 0.1 M Tris HCl, pH 8.0 |