6SY1
Crystal structure of the human 2-oxoadipate dehydrogenase DHTKD1 (E1)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I03 |
| Synchrotron site | Diamond |
| Beamline | I03 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-11-25 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.9762 |
| Spacegroup name | P 1 |
| Unit cell lengths | 78.550, 81.220, 86.900 |
| Unit cell angles | 63.43, 76.96, 72.06 |
Refinement procedure
| Resolution | 46.006 - 1.870 |
| R-factor | 0.1919 |
| Rwork | 0.190 |
| R-free | 0.22960 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2jgd |
| Data reduction software | xia2 |
| Data scaling software | xia2 |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 46.010 | 46.020 | 1.900 |
| High resolution limit [Å] | 1.870 | 5.070 | 1.870 |
| Rmeas | 0.144 | 0.063 | 0.672 |
| Rpim | 0.102 | 0.045 | 0.475 |
| Total number of observations | 254605 | 13210 | 10286 |
| Number of reflections | 145107 | 7441 | 6864 |
| <I/σ(I)> | 5 | 13.5 | 0.9 |
| Completeness [%] | 96.6 | 98.9 | 91.3 |
| Redundancy | 1.8 | 1.8 | 1.5 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION | 8.5 | 293 | 20% PEG3350 -- 10% ethylene glycol -- 0.1M bis-tris-propane pH 8.5 -- 0.2M sodium formate |
