6SVM
Crystal structure of human GFAT-1 in complex with Glucose-6-Phosphate, L-Glu, and UDP-GalNAc
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2019-06-28 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.0 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 151.995, 151.995, 165.803 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.150 - 2.481 |
R-factor | 0.1896 |
Rwork | 0.189 |
R-free | 0.22170 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6r4e |
RMSD bond length | 0.003 |
RMSD bond angle | 0.724 |
Data reduction software | XDS (Mar 15, 2019) |
Data scaling software | XDS (Mar 15, 2019) |
Phasing software | PHENIX (dev_2499) |
Refinement software | PHENIX (dev_2499) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.160 | 2.570 |
High resolution limit [Å] | 2.481 | 2.481 |
Number of reflections | 68982 | 6701 |
<I/σ(I)> | 14.75 | |
Completeness [%] | 99.8 | |
Redundancy | 8.7 | |
CC(1/2) | 0.999 | 0.496 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 0.1 M Bis tris propane pH 8.75, 0.2 M Potassium sodium tartrate, 20 % PEG3350 |