6SQO
Crystal structure of human MDM2 RING domain homodimer bound to UbcH5B-Ub
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-06 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.916 |
Spacegroup name | P 61 |
Unit cell lengths | 129.709, 129.709, 70.537 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 112.000 - 1.410 |
Rwork | 0.139 |
R-free | 0.17300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5mnj |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2142: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 112.000 | 1.430 |
High resolution limit [Å] | 1.410 | 1.410 |
Rmerge | 0.047 | |
Number of reflections | 129794 | 6423 |
<I/σ(I)> | 19.2 | |
Completeness [%] | 100.0 | |
Redundancy | 8.9 | |
CC(1/2) | 1.000 | 0.542 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 292 | 0.1 M SPG, pH 7.0, 10% (w/v) PEG Smear Broad, 0.15 M NH4NO3 |