6S7F
Human CD73 (5'-nucleotidase) in complex with PSB12379 (an AOPCP derivative) in the closed state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-10-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.918409 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 53.910, 95.660, 233.220 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.970 - 2.050 |
R-factor | 0.1814 |
Rwork | 0.180 |
R-free | 0.21550 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 4h2i |
RMSD bond length | 0.010 |
RMSD bond angle | 1.150 |
Data reduction software | XDS (November 3, 2014) |
Data scaling software | Aimless (0.2.8) |
Phasing software | BUSTER (2.10.1) |
Refinement software | BUSTER (2.10.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.970 | 46.970 | 2.110 |
High resolution limit [Å] | 2.050 | 8.940 | 2.050 |
Rmerge | 0.175 | 0.023 | 2.576 |
Rmeas | 0.189 | 0.025 | 2.769 |
Rpim | 0.070 | 0.010 | 1.003 |
Total number of observations | 278374 | ||
Number of reflections | 38440 | 538 | 2949 |
<I/σ(I)> | 8.8 | 0.8 | |
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 7.2 | 6.1 | 7.4 |
CC(1/2) | 0.998 | 1.000 | 0.272 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 292.15 | Enter some text here...Crystallization buffer: 5 % (w/v) polyethylene glycol 6000, 0.1 M citric acid pH 5.0-6.0. Crystallization drop:1 uL crystallization buffer + 1 uL of 3 mg/mL protein in 10 mM Tris pH 8.0, 100 uM ZnCl2, 1 mM Inhibitor. Cryobuffer: 25 % (v/v) polyethylene glycol 200, 0.1 MES pH 5.5 |