6S25
Crystal Structure of the first bromodomain of BRD4 in complex with a benzodiazepine ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-27 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9762 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.247, 44.228, 78.512 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.500 - 1.100 |
R-factor | 0.1246 |
Rwork | 0.124 |
R-free | 0.14480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2oss |
RMSD bond length | 0.015 |
RMSD bond angle | 1.981 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0232) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.510 | 28.510 | 1.160 |
High resolution limit [Å] | 1.100 | 3.480 | 1.100 |
Rmerge | 0.044 | 0.421 | |
Rmeas | 0.070 | 0.048 | 0.493 |
Rpim | 0.028 | 0.019 | 0.251 |
Number of reflections | 53306 | 1871 | 7537 |
<I/σ(I)> | 13.9 | 12.2 | 1.8 |
Completeness [%] | 99.6 | 99.7 | 97.7 |
Redundancy | 5.8 | 5.8 | 3.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 20% PEG6000 10% ethylene glycol 0.2M lithium chloride |