6QF4
X-Ray structure of human Serine/Threonine Kinase 17B (STK17B) aka DRAK2 in complex with ADP obtained by on-chip soaking
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-06 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 85.479, 85.479, 118.073 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.739 - 2.495 |
R-factor | 0.1871 |
Rwork | 0.183 |
R-free | 0.22680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3lm5 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.476 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.8) |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1-2155_9999) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.740 | 42.740 | 2.600 |
High resolution limit [Å] | 2.495 | 9.000 | 2.500 |
Rmerge | 0.107 | 0.063 | 0.493 |
Rmeas | 0.113 | 0.067 | 0.522 |
Rpim | 0.036 | 0.022 | 0.166 |
Number of reflections | 15529 | 379 | 1743 |
<I/σ(I)> | 14.7 | 5.3 | |
Completeness [%] | 98.6 | 95.3 | 99.6 |
Redundancy | 9.3 | 8.3 | 9.7 |
CC(1/2) | 0.997 | 0.997 | 0.922 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 7.5 | 295 | 0.2M ammonium acetate, 20% PEG 3350, 50mM sodium/potassium tartrate, 0.8mM quercetin |