6Q01
TDP2 UBA Domain Bound to Ubiquitin at 0.85 Angstroms Resolution, Crystal Form 2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-04-17 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 0.8211 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 53.793, 65.461, 67.677 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.961 - 0.851 |
R-factor | 0.1009 |
Rwork | 0.100 |
R-free | 0.11430 |
Structure solution method | SAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.385 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | HKL-3000 |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 0.860 |
High resolution limit [Å] | 0.850 | 2.310 | 0.850 |
Rmerge | 0.081 | 0.075 | 0.852 |
Rmeas | 0.086 | 0.080 | |
Rpim | 0.030 | 0.027 | 0.564 |
Total number of observations | 1086364 | ||
Number of reflections | 205551 | 10970 | 8745 |
<I/σ(I)> | 13.3 | ||
Completeness [%] | 98.5 | 99.9 | 84.5 |
Redundancy | 5.3 | 10.2 | 3 |
CC(1/2) | 0.996 | 0.501 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 20 mM TRIS pH 7.5, 100 mM NaCl, 150 mM Magnesium Formate, 200 mM Potassium Formate, 18% (w/v) PEG 3350 |