6PKY
Guinea pig N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase (NAGPA) catalytic domain auto-inhibited by pro-peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-03 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.91977 |
Spacegroup name | P 41 |
Unit cell lengths | 72.622, 72.622, 240.691 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.231 - 3.000 |
R-factor | 0.2188 |
Rwork | 0.212 |
R-free | 0.25790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6pkg |
RMSD bond length | 0.002 |
RMSD bond angle | 0.604 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.15_3459: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.110 |
High resolution limit [Å] | 3.000 | 3.000 |
Number of reflections | 24805 | 2460 |
<I/σ(I)> | 10.6 | |
Completeness [%] | 100.0 | |
Redundancy | 23.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.25 | 295 | 20% PEG 3350, 0.1M bis-tris propane pH 8.25, 0.2M NaBr |