Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6OUV

1-deoxy-D-xylulose 5-phosphate synthase (DXPS) from Deinococcus radiodurans with methylacetylphosphonate (MAP) bound

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2018-10-31
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.9791
Spacegroup nameP 21 21 21
Unit cell lengths78.503, 125.279, 151.699
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution96.597 - 1.937
R-factor0.1567
Rwork0.156
R-free0.17380
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2o1x
RMSD bond length0.003
RMSD bond angle0.615
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]96.6002.010
High resolution limit [Å]1.9371.937
Rmerge0.0760.719
Number of reflections11017710201
<I/σ(I)>22.4
Completeness [%]98.6
Redundancy6.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP3000.1 M BES, triethanolamine pH 7.5, 15% (w/v) PEG 3000, 20% (v/v) 1,2,4-butanetriol, 1% (w/v) non-detergents sulfobetaines (NDSB)-256 (Hampton), 25 mM L-arginine, 25 mM L-threonine, 25 mM L-histidine, and 25 mM trans-4-hydroxy-L-proline

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon