6OKD
Crystal Structure of human transferrin receptor in complex with a cystine-dense peptide
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ALS BEAMLINE 5.0.1 |
| Synchrotron site | ALS |
| Beamline | 5.0.1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-06-21 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.979 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 102.601, 145.500, 133.494 |
| Unit cell angles | 90.00, 90.02, 90.00 |
Refinement procedure
| Resolution | 50.010 - 1.850 |
| R-factor | 0.16405 |
| Rwork | 0.163 |
| R-free | 0.18714 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | pdbid 1de4 |
| RMSD bond length | 0.016 |
| RMSD bond angle | 1.611 |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | PHASER (2.7.17) |
| Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 1.880 |
| High resolution limit [Å] | 1.850 | 5.020 | 1.850 |
| Rmerge | 0.086 | 0.038 | 0.693 |
| Rmeas | 0.103 | 0.045 | 0.824 |
| Rpim | 0.056 | 0.024 | 0.441 |
| Total number of observations | 551226 | ||
| Number of reflections | 166017 | 8405 | 8198 |
| <I/σ(I)> | 8.3 | ||
| Completeness [%] | 99.8 | 99.5 | 99.9 |
| Redundancy | 3.3 | 3.4 | 3.3 |
| CC(1/2) | 0.998 | 0.664 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION | 6.5 | 298 | PEG 6000, Mes |
