6OJF
Dimeric structure of LRRK2 GTPase domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-12 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 44.634, 101.883, 44.610 |
Unit cell angles | 90.00, 100.95, 90.00 |
Refinement procedure
Resolution | 43.820 - 1.600 |
R-factor | 0.1435 |
Rwork | 0.143 |
R-free | 0.15760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3dpu |
RMSD bond length | 0.002 |
RMSD bond angle | 1.295 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.630 |
High resolution limit [Å] | 1.590 | 4.340 | 1.600 |
Rmerge | 0.084 | 0.058 | 0.577 |
Rmeas | 0.087 | 0.060 | 0.623 |
Rpim | 0.023 | 0.016 | 0.223 |
Number of reflections | 49223 | 2668 | 1699 |
<I/σ(I)> | 6.3 | ||
Completeness [%] | 94.7 | 99.9 | 67.3 |
Redundancy | 12.6 | 14.2 | 6 |
CC(1/2) | 0.998 | 0.804 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 6.5 | 298 | 100mM KSCN, 25% PEGMME 2000, 0.1M BisTris pH 6.5 |