6OHO
Structure of human Phospholipase D2 catalytic domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-09-16 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 91.705, 131.336, 107.294 |
Unit cell angles | 90.00, 111.77, 90.00 |
Refinement procedure
Resolution | 48.570 - 2.000 |
R-factor | 0.1835 |
Rwork | 0.181 |
R-free | 0.22390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ohm |
RMSD bond length | 0.005 |
RMSD bond angle | 0.747 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.070 |
High resolution limit [Å] | 2.000 | 2.000 |
Number of reflections | 79191 | 7826 |
<I/σ(I)> | 6.3 | |
Completeness [%] | 99.0 | |
Redundancy | 6.6 | |
CC(1/2) | 0.950 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.7 | 298 | 0.2M ammonium sulfate, 20% PEG3350, 0.1M bis-tris pH 6.7 |