6OE7
Crystal structure of HMCES cross-linked to DNA abasic site
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-15 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.978900 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 55.509, 51.534, 149.720 |
Unit cell angles | 90.00, 92.72, 90.00 |
Refinement procedure
Resolution | 48.720 - 2.200 |
R-factor | 0.1954 |
Rwork | 0.194 |
R-free | 0.21610 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.008 |
RMSD bond angle | 1.509 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.720 | 48.720 | 2.270 |
High resolution limit [Å] | 2.200 | 9.070 | 2.200 |
Rmerge | 0.053 | 0.030 | 0.861 |
Rmeas | 0.064 | 0.038 | 1.023 |
Rpim | 0.035 | 0.022 | 0.547 |
Number of reflections | 20951 | 307 | 1814 |
<I/σ(I)> | 12.3 | ||
Completeness [%] | 96.8 | 91.7 | 98 |
Redundancy | 3.2 | 3.1 | 3.4 |
CC(1/2) | 0.998 | 0.995 | 0.818 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 20% PEG3350, 0.1 M potassium chloride, 0.1 M Bis-Tris, 0.05 M magnesium chloride |