6NR0
SIRT2(56-356) with covalent intermediate between mechanism-based inhibitor Glucose-TM-1beta and 1'-SH ADP-ribose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.3 |
Synchrotron site | ALS |
Beamline | 5.0.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-09-10 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9765 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 82.310, 76.840, 114.461 |
Unit cell angles | 90.00, 95.87, 90.00 |
Refinement procedure
Resolution | 63.690 - 2.450 |
R-factor | 0.223 |
Rwork | 0.220 |
R-free | 0.25620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4x3o |
RMSD bond length | 0.011 |
RMSD bond angle | 1.340 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 63.693 | 2.538 |
High resolution limit [Å] | 2.450 | 2.450 |
Rmerge | 0.036 | 0.388 |
Rmeas | 0.051 | 0.549 |
Number of reflections | 25380 | 2474 |
<I/σ(I)> | 13.33 | 2.06 |
Completeness [%] | 91.8 | 82.5 |
Redundancy | 2 | 2 |
CC(1/2) | 0.999 | 0.722 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 293 | Mixed solution of 0.44 mM protein (in buffer of 20 mM Tris/HCl pH 7.5, 160 mM NaCl) 2.5 mM NAD+, 2.5 mM Glucose-TM-1beta with an equal volume of well solution of 2 M (NH4)2SO4, 80 mM Na Acetate/HCl pH 5.0 |